PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4702_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 525aa    MW: 59946.7 Da    PI: 6.5765
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4702_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.47.9e-063523851755
                 HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 N++f+ Lr+++P+ +       ++K eiL  +++Y+++L+
  RrC4702_p1 352 NEKFSVLRTMVPTvN------EVDKEEILNNTIKYLQELE 385
                 9************55......8***************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-4623209IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.883335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-6345390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-8350398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-9352395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSLTKDDGVE AARGRSSRRN SLLTKQLAVA VKSVQWSYAI FWSSSPTQSG VLEWGEGCYN  60
GEMKKRKKRN EAHYKHVLQR SSQLRTLYMC MREGDSTTTI STTHDDDDYQ NCNSRSMMLS  120
PDDLSDEEWY YIVSMSYVFS PSQCLPGRTL ATGETIWLCN AQYADNKFFS RSLLARTVVC  180
FPYLGGVIEL GVTELISEDP SLLQHIKSCL LETSKPDCSS KNFFAHQDND DDDDKKKNHE  240
IQFGISDLML DEDLHYKRTV STLLKYASDK NSHHRQPPDL VSSNSGSSFL RWKQPDSNLL  300
LKPTNLKPLR QNVLRKILHD VPLMHSVDAK RMLPNNTFGL NQDDPSVKRK ENEKFSVLRT  360
MVPTVNEVDK EEILNNTIKY LQELEERVEE LESCMGSVNF AERKRKSLND SVLIEETSGN  420
YDDSTKIDGN SGETEQVTSF RDETRLRVKL NETDVVMEVR CFYRDYIVAD IMETLSKLHM  480
DAFSVRSHTL NGFLTLNLKA KLRGAAVASV GMIKRELRRV IGESI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-12232109192Transcription factor MYC3
4rqw_B2e-12232109192Transcription factor MYC3
4rru_A5e-122320648227Transcription factor MYC3
4rs9_A2e-12232109192Transcription factor MYC3
4ywc_A5e-122320648227Transcription factor MYC3
4ywc_B5e-122320648227Transcription factor MYC3
4yz6_A2e-12232109192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16367KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936640.0AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
GenBankAF2516970.0AF251697.1 Arabidopsis thaliana putative transcription factor BHLH12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628089.10.0PREDICTED: transcription factor MYC1-like
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLA0A078JYE60.0A0A078JYE6_BRANA; BnaCnng68660D protein
STRINGBra000970.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein